../../tmp/servers/virsirnadb/1517345945
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi2179 | 1 | agaccgtgcaccatgagcac | 20 | |
| X61596.1 | Hepatitis C virus core, E1, NS1/E2, NS2, NS3, NS4a, NS4b and NS5 gene | 313 | .................... | 332 | 100 |
| D10749.1 | HPCHCJ1 Hepatitis C virus genomic RNA, complete genome, isolate: HC-J1 | 330 | .................... | 349 | 100 |
| D13558.1 | HPCJ483 Hepatitis C virus genome, complete sequence | 330 | .................... | 349 | 100 |
| D10750.1 | HPCJ491 Hepatitis C virus genome, complete sequence | 330 | .................... | 349 | 100 |
| D11168.1 | HPCJTA Hepatitis C virus (HCV) complete genome | 330 | .................... | 349 | 100 |
| D11355.1 | HPCJTB Hepatitis C virus genomic RNA, complete genome, strain: JT' | 330 | .................... | 349 | 100 |
| D00944.1 | HPCPOLP Hepatitis C virus genomic RNA for polyprotein, complete cds | 329 | .................... | 348 | 100 |
| M96362.1 | HPCUNKCDS Hepatitis C virus mRNA, complete cds | 331 | .................... | 350 | 100 |
| M67463.1 | HPCCGAA Hepatitis C virus subtype 1a, complete genome | 330 | .................... | 349 | 100 |
| L02836.1 | HPCCGENOM Hepatitis C virus subtype 1b strain HeBei, complete genome | 319 | .................... | 338 | 100 |
| M84754.1 | HPCGENANTI Hepatitis C virus subtype 1b strain Taiwan, complete genome | 330 | .................... | 349 | 100 |
| M58335.1 | HPCHUMR Hepatitis C virus subtype 1b, complete genome | 321 | .................... | 340 | 100 |
| M62321.1 | HPCPLYPRE Hepatitis C virus subtype 1a, complete genome | 330 | .................... | 349 | 100 |
| S62220.1 | Hepatitis C virus subtype 1b, complete genome | 329 | .................... | 348 | 100 |
| U01214.1 | HCU01214 Hepatitis C virus subtype 1b strain HCV-L2, complete genome | 331 | .................... | 350 | 100 |
| D14853.1 | HPCCGS Hepatitis C virus (isolate HC-G9) genomic RNA, complete genome | 330 | .................... | 349 | 100 |
| D10934.1 | HPCRNA Hepatitis C virus RNA, complete genome sequence | 330 | .................... | 349 | 100 |
| U16362.1 | HCU16362 Hepatitis C virus subtype 1b, complete genome | 331 | .................... | 350 | 100 |
| D63857.1 | HPVHCVN Hepatitis C virus gene for E1 and E2/NS1 envelope glycoprotein | 237 | .................... | 256 | 100 |
| D50482.1 | HPCK1R3 Hepatitis C virus (strain HCV-1b, clone HCV-K1-R3), complete g | 318 | .................... | 337 | 100 |
| D50483.1 | HPCK1S1 Hepatitis C virus (strain HCV-1b, clone HCV-K1-S1), complete g | 318 | .................... | 337 | 100 |
| D50484.1 | HPCK1S3 Hepatitis C virus (strain HCV-1b, clone HCV-K1-S3), complete g | 318 | .................... | 337 | 100 |
| D50485.1 | HPCK1S2 Hepatitis C virus (strain HCV-1b, clone HCV-K1-S2), complete g | 318 | .................... | 337 | 100 |
| D50481.1 | HPCK1R2 Hepatitis C virus (strain HCV-1b, clone HCV-K1-R2), complete g | 318 | .................... | 337 | 100 |
| D50480.1 | HPCK1R1 Hepatitis C virus (strain HCV-1b, clone HCV-K1-R1), complete g | 318 | .................... | 337 | 100 |
| D14484.1 | HPCJRNA Hepatitis C virus strain J33 genomic RNA, complete genome | 330 | .................... | 349 | 100 |
| U45476.1 | HCU45476 Hepatitis C virus isolate HD-1, complete genome | 330 | .................... | 349 | 100 |
| D85516.1 | Hepatitis C virus genomic RNA, complete cds | 330 | .................... | 349 | 100 |
| AF011751.1 | Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds | 330 | .................... | 349 | 100 |
| AF011752.1 | Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds | 330 | .................... | 349 | 100 |
| AF011753.1 | Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds | 330 | .................... | 349 | 100 |
| AJ000009.1 | Hepatitis C virus complete genome sequence | 313 | .................... | 332 | 100 |
| AF054247.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete | 330 | .................... | 349 | 100 |
| AF054248.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete | 330 | .................... | 349 | 100 |
| AF054249.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete | 331 | .................... | 350 | 100 |
| AF054250.1 | Hepatitis C virus subtype 1b strain HC-J4, complete genome | 320 | .................... | 339 | 100 |
| AJ132996.1 | Hepatitis C virus, complete genome, isolate HCV-AD78 | 329 | .................... | 348 | 100 |
| AJ132997.1 | Hepatitis C virus, complete genome, isolate HCV-AD78P1 | 329 | .................... | 348 | 100 |
| AJ238799.1 | Hepatitis C virus type 1b complete genome, isolate Con1 | 330 | .................... | 349 | 100 |
| AF176573.1 | Hepatitis C virus subtype 1b strain 274933RU, complete genome | 330 | .................... | 349 | 100 |
| AB016785.1 | Hepatitis C virus genomic RNA, complete sequence | 331 | .................... | 350 | 100 |
| AF165047.1 | Hepatitis C virus subtype 1b strain MD2-1, complete genome | 318 | .................... | 337 | 100 |
| AF165048.1 | Hepatitis C virus subtype 1b strain MD2-2, complete genome | 318 | .................... | 337 | 100 |
| AF165051.1 | Hepatitis C virus subtype 1b strain MD4-1, complete genome | 318 | .................... | 337 | 100 |
| AF165052.1 | Hepatitis C virus subtype 1b strain MD4-2, complete genome | 318 | .................... | 337 | 100 |
| AF165057.1 | Hepatitis C virus subtype 1b strain MD7-1, complete genome | 318 | .................... | 337 | 100 |
| AF165058.1 | Hepatitis C virus subtype 1b strain MD7-2, complete genome | 318 | .................... | 337 | 100 |
| AF165059.1 | Hepatitis C virus subtype 1b strain MD8-1, complete genome | 318 | .................... | 337 | 100 |
| AF165060.1 | Hepatitis C virus subtype 1b strain MD8-2, complete genome | 318 | .................... | 337 | 100 |
| AF165061.1 | Hepatitis C virus subtype 1b strain MD9-1, complete genome | 318 | .................... | 337 | 100 |
| AF165063.1 | Hepatitis C virus subtype 1b strain MD10-1, complete genome | 318 | .................... | 337 | 100 |
| AF165064.1 | Hepatitis C virus subtype 1b strain MD10-2, complete genome | 318 | .................... | 337 | 100 |
| AB031663.1 | Hepatitis C virus (isolate VAT96) genomic RNA, complete genome | 330 | .................... | 349 | 100 |
| AF169002.1 | Hepatitis C virus subtype 2a isolate NDM228, complete genome | 329 | .................... | 348 | 100 |
| AF169005.1 | Hepatitis C virus subtype 2a isolate NDM59, complete genome | 329 | .................... | 348 | 100 |
| AF238482.1 | Hepatitis C virus subtype 2a strain MD2a-2, complete genome | 295 | .................... | 314 | 100 |
| AF238483.1 | Hepatitis C virus subtype 2a strain MD2a-4, complete genome | 295 | .................... | 314 | 100 |
| AF238485.1 | Hepatitis C virus subtype 2a strain MD2a-7, complete genome | 295 | .................... | 314 | 100 |
| AF208024.1 | Hepatitis C virus subtype 1b strain MD34, complete genome | 318 | .................... | 337 | 100 |
| AF207754.1 | Hepatitis C virus subtype 1b strain MD13, complete genome | 318 | .................... | 337 | 100 |
| AF207756.1 | Hepatitis C virus subtype 1b strain MD15, complete genome | 318 | .................... | 337 | 100 |
| AF207758.1 | Hepatitis C virus subtype 1b strain MD17, complete genome | 318 | .................... | 337 | 100 |
| AF207760.1 | Hepatitis C virus subtype 1b strain MD19, complete genome | 318 | .................... | 337 | 100 |
| AF207761.1 | Hepatitis C virus subtype 1b strain MD20, complete genome | 318 | .................... | 337 | 100 |
| AF207763.1 | Hepatitis C virus subtype 1b strain MD22, complete genome | 318 | .................... | 337 | 100 |
| AF207766.1 | Hepatitis C virus subtype 1b strain MD25, complete genome | 318 | .................... | 337 | 100 |
| AF207769.1 | Hepatitis C virus subtype 1b strain MD28, complete genome | 318 | .................... | 337 | 100 |
| AF207772.1 | Hepatitis C virus subtype 1b strain MD31, complete genome | 318 | .................... | 337 | 100 |
| AF207774.1 | Hepatitis C virus subtype 1b strain MD33, complete genome | 318 | .................... | 337 | 100 |
| AF271632.1 | Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome | 330 | .................... | 349 | 100 |
| AB030907.1 | Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome | 330 | .................... | 349 | 100 |
| AF290978.1 | Hepatitis C virus subtype 1a isolate colonel, complete genome | 318 | .................... | 337 | 100 |
| AB049087.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT05 | 299 | .................... | 318 | 100 |
| AB049092.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 299 | .................... | 318 | 100 |
| AB049093.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT15 | 299 | .................... | 318 | 100 |
| AB049096.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT19 | 299 | .................... | 318 | 100 |
| AB049097.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT19 | 299 | .................... | 318 | 100 |
| AB049098.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT20 | 299 | .................... | 318 | 100 |
| AB049099.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT21 | 330 | .................... | 349 | 100 |
| AB049100.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT21 | 299 | .................... | 318 | 100 |
| AB049101.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT22 | 299 | .................... | 318 | 100 |
| AB047639.1 | Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome | 329 | .................... | 348 | 100 |
| AB047640.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 | 329 | .................... | 348 | 100 |
| AB047641.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 | 329 | .................... | 348 | 100 |
| AB047642.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 | 329 | .................... | 348 | 100 |
| AB047645.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 | 329 | .................... | 348 | 100 |
| AY051292.1 | Hepatitis C virus (isolate India) polyprotein mRNA, complete cds | 330 | .................... | 349 | 100 |
| AF356827.1 | Hepatitis C virus subtype 1b isolate HCV-S1, complete genome | 330 | .................... | 349 | 100 |
| AF483269.1 | Hepatitis C virus type 1b isolate HCV-TR1 from Turkey, complete genom | 295 | .................... | 314 | 100 |
| AF511948.1 | Hepatitis C virus isolate XF222 polyprotein-like gene, complete seque | 330 | .................... | 349 | 100 |
| AF511949.1 | Hepatitis C virus isolate XF223 polyprotein-like gene, complete seque | 330 | .................... | 349 | 100 |
| AF511950.1 | Hepatitis C virus isolate XF224 polyprotein-like gene, complete seque | 302 | .................... | 321 | 100 |
| AF139594.2 | Hepatitis C virus subtype 1b strain HCV-N, complete genome | 330 | .................... | 349 | 100 |
| AB080299.1 | Hepatitis C virus genomic RNA, complete genome, isolate:M1LE | 330 | .................... | 349 | 100 |
| AY460204.1 | Hepatitis C virus from Shanghai, complete genome | 330 | .................... | 349 | 100 |
| AY587844.1 | Hepatitis C virus strain N589 polyprotein gene, complete cds | 278 | .................... | 297 | 100 |
| AY651061.1 | Hepatitis C virus isolate Khaja1, complete genome | 330 | .................... | 349 | 100 |
| AY746460.1 | Hepatitis C virus genotype 2a polyprotein gene, complete cds | 329 | .................... | 348 | 100 |
| AB154177.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154178.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154179.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154180.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154181.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154182.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154183.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154185.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154186.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154187.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154189.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154190.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154191.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154192.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154194.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154198.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154199.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154200.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154201.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154202.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154203.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154204.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154205.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB154206.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 318 | .................... | 337 | 100 |
| AB191333.1 | Hepatitis C virus genomic RNA, complete genome, strain:0 | 330 | .................... | 349 | 100 |
| AY878650.1 | Hepatitis C virus subtype 6k isolate KM45, complete genome | 313 | .................... | 332 | 100 |
| AY878651.1 | Hepatitis C virus subtype 6k isolate KM41, complete genome | 298 | .................... | 317 | 100 |
| DQ071885.1 | Hepatitis C virus subtype 1b polyprotein mRNA, complete cds | 330 | .................... | 349 | 100 |
| DQ278891.1 | Hepatitis C virus subtype 6k isolate KM45, complete genome | 329 | .................... | 348 | 100 |
| DQ278893.1 | Hepatitis C virus subtype 6k isolate KM41, complete genome | 330 | .................... | 349 | 100 |
| AJ851228.1 | Hepatitis C virus gene for polyprotein, genomic RNA, isolate Equatori | 303 | .................... | 322 | 100 |
| DQ418782.1 | Hepatitis C virus subtype 4a isolate 01-09 polyprotein gene, complete | 243 | .................... | 262 | 100 |
| DQ418783.1 | Hepatitis C virus subtype 4a isolate 02-42 polyprotein gene, complete | 208 | .................... | 227 | 100 |
| DQ418784.1 | Hepatitis C virus subtype 4a isolate 02C polyprotein gene, complete c | 253 | .................... | 272 | 100 |
| DQ418785.1 | Hepatitis C virus isolate 02Q polyprotein gene, partial cds | 251 | .................... | 270 | 100 |
| DQ418786.1 | Hepatitis C virus subtype 4d isolate 03-18 polyprotein gene, complete | 223 | .................... | 242 | 100 |
| DQ418787.1 | Hepatitis C virus subtype 4a isolate F753 polyprotein gene, complete | 251 | .................... | 270 | 100 |
| DQ418788.1 | Hepatitis C virus subtype 4a isolate F7157 polyprotein gene, complete | 251 | .................... | 270 | 100 |
| DQ418789.1 | Hepatitis C virus subtype 4a isolate L835 polyprotein gene, complete | 250 | .................... | 269 | 100 |
| DQ516083.1 | Hepatitis C virus subtype 4d isolate 24 polyprotein gene, complete cd | 268 | .................... | 287 | 100 |
| DQ516084.1 | Hepatitis C virus subtype 4a isolate 25 polyprotein gene, complete cd | 268 | .................... | 287 | 100 |
| DQ835763.1 | Hepatitis C virus subtype 6m isolate C-0208, complete genome | 327 | .................... | 346 | 100 |
| DQ835767.1 | Hepatitis C virus subtype 6m isolate B4/92, complete genome | 327 | .................... | 346 | 100 |
| DQ988073.1 | Hepatitis C virus isolate Eg2 polyprotein gene, partial cds | 248 | .................... | 267 | 100 |
| DQ988074.1 | Hepatitis C virus isolate Eg3 polyprotein gene, partial cds | 248 | .................... | 267 | 100 |
| DQ988075.1 | Hepatitis C virus isolate Eg4 polyprotein gene, partial cds | 248 | .................... | 267 | 100 |
| DQ988077.1 | Hepatitis C virus isolate Eg9 polyprotein gene, partial cds | 249 | .................... | 268 | 100 |
| DQ988078.1 | Hepatitis C virus isolate Eg10 polyprotein gene, partial cds | 244 | .................... | 263 | 100 |
| EF032883.1 | Hepatitis C virus subtype 1a isolate 03-32_P1_10.16.03 polyprotein ge | 252 | .................... | 271 | 100 |
| EF032884.1 | Hepatitis C virus subtype 1a isolate 03-32_P2_5.14.04 polyprotein gen | 231 | .................... | 250 | 100 |
| EF032885.1 | Hepatitis C virus subtype 1a isolate 03-32_P4_11.5.05 polyprotein gen | 251 | .................... | 270 | 100 |
| EF032886.1 | Hepatitis C virus subtype 1a isolate BR601 polyprotein gene, complete | 257 | .................... | 276 | 100 |
| EF032887.1 | Hepatitis C virus subtype 1a isolate BR554_P1_5.23.03 polyprotein gen | 264 | .................... | 283 | 100 |
| EF032888.1 | Hepatitis C virus subtype 1a isolate BR554_P10_10.21.03 polyprotein g | 252 | .................... | 271 | 100 |
| EF032889.1 | Hepatitis C virus subtype 1a isolate BR554_P16_6.24.04 polyprotein ge | 236 | .................... | 255 | 100 |
| EF032890.1 | Hepatitis C virus subtype 1a isolate BR554_P17_10.21.04 polyprotein g | 250 | .................... | 269 | 100 |
| EF032892.1 | Hepatitis C virus subtype 1b isolate BR1427_P1_10.7.03 polyprotein ge | 306 | .................... | 325 | 100 |
| EF032893.1 | Hepatitis C virus subtype 1b isolate BR1427_P3_11.10.03 polyprotein g | 304 | .................... | 323 | 100 |
| EF032900.1 | Hepatitis C virus subtype 1a isolate BR111_P5_4.30.03 polyprotein gen | 250 | .................... | 269 | 100 |
| AB249644.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 330 | .................... | 349 | 100 |
| EF621489.1 | Hepatitis C virus subtype 1a strain HC-TN, complete genome | 330 | .................... | 349 | 100 |
| EF638081.1 | Hepatitis C virus subtype 1b from Hubei, complete genome | 286 | .................... | 305 | 100 |
| EF407411.1 | Hepatitis C virus isolate 5043 polyprotein gene, complete cds | 236 | .................... | 255 | 100 |
| EF407413.1 | Hepatitis C virus isolate 5012 polyprotein gene, complete cds | 277 | .................... | 296 | 100 |
| EF407414.1 | Hepatitis C virus isolate 7018 polyprotein gene, complete cds | 233 | .................... | 252 | 100 |
| EF407415.1 | Hepatitis C virus isolate 3018 polyprotein gene, complete cds | 280 | .................... | 299 | 100 |
| EF407417.1 | Hepatitis C virus isolate 4040 polyprotein gene, complete cds | 289 | .................... | 308 | 100 |
| EF407418.1 | Hepatitis C virus isolate 7020 polyprotein gene, complete cds | 274 | .................... | 293 | 100 |
| EF407419.1 | Hepatitis C virus isolate 5003 polyprotein gene, complete cds | 281 | .................... | 300 | 100 |
| EF407421.1 | Hepatitis C virus isolate 8030 polyprotein gene, complete cds | 233 | .................... | 252 | 100 |
| EF407422.1 | Hepatitis C virus isolate 6001 polyprotein gene, complete cds | 236 | .................... | 255 | 100 |
| EF407423.1 | Hepatitis C virus isolate 8028 polyprotein gene, complete cds | 276 | .................... | 295 | 100 |
| EF407424.1 | Hepatitis C virus isolate 5069 polyprotein gene, partial cds | 254 | .................... | 273 | 100 |
| EF407425.1 | Hepatitis C virus isolate 6071 polyprotein gene, complete cds | 244 | .................... | 263 | 100 |
| EF407426.1 | Hepatitis C virus isolate 8070 polyprotein genomic sequence | 279 | .................... | 298 | 100 |
| EF407427.1 | Hepatitis C virus isolate 6025 polyprotein gene, complete cds | 277 | .................... | 296 | 100 |
| EF407428.1 | Hepatitis C virus isolate 1024 polyprotein gene, complete cds | 236 | .................... | 255 | 100 |
| EF407431.1 | Hepatitis C virus isolate 3005 polyprotein gene, complete cds | 228 | .................... | 247 | 100 |
| EF407432.1 | Hepatitis C virus isolate 1013 polyprotein gene, complete cds | 291 | .................... | 310 | 100 |
| EF407433.1 | Hepatitis C virus isolate 7046 polyprotein gene, complete cds | 281 | .................... | 300 | 100 |
| EF407434.1 | Hepatitis C virus isolate 2011 polyprotein gene, complete cds | 252 | .................... | 271 | 100 |
| EF407435.1 | Hepatitis C virus isolate 5014 polyprotein gene, complete cds | 247 | .................... | 266 | 100 |
| EF407436.1 | Hepatitis C virus isolate 7040 polyprotein gene, complete cds | 235 | .................... | 254 | 100 |
| EF407436.1 | Hepatitis C virus isolate 7040 polyprotein gene, complete cds | 2540 | ............________ | 2529 | 60 |
| EF407437.1 | Hepatitis C virus isolate 1030 polyprotein gene, complete cds | 290 | .................... | 309 | 100 |
| EF407438.1 | Hepatitis C virus isolate 7012 polyprotein gene, complete cds | 277 | .................... | 296 | 100 |
| EF407439.1 | Hepatitis C virus isolate 8003 polyprotein gene, complete cds | 275 | .................... | 294 | 100 |
| EF407440.1 | Hepatitis C virus isolate 7002 polyprotein gene, complete cds | 278 | .................... | 297 | 100 |
| EF407441.1 | Hepatitis C virus isolate 1036 polyprotein gene, complete cds | 289 | .................... | 308 | 100 |
| EF407442.1 | Hepatitis C virus isolate 8012 polyprotein gene, complete cds | 244 | .................... | 263 | 100 |
| EF407443.1 | Hepatitis C virus isolate 7024 polyprotein gene, complete cds | 290 | .................... | 309 | 100 |
| EF407444.1 | Hepatitis C virus isolate 6030 polyprotein gene, complete cds | 251 | .................... | 270 | 100 |
| EF407445.1 | Hepatitis C virus isolate 5009 polyprotein gene, complete cds | 251 | .................... | 270 | 100 |
| EF407446.1 | Hepatitis C virus isolate 8009 polyprotein gene, complete cds | 251 | .................... | 270 | 100 |
| EF407447.1 | Hepatitis C virus isolate 8004 polyprotein gene, complete cds | 290 | .................... | 309 | 100 |
| EF407448.1 | Hepatitis C virus isolate 6018 polyprotein gene, partial cds | 290 | .................... | 309 | 100 |
| EF407449.1 | Hepatitis C virus isolate 2027 polyprotein gene, complete cds | 290 | .................... | 309 | 100 |
| EF407450.1 | Hepatitis C virus isolate 6020 polyprotein gene, complete cds | 248 | .................... | 267 | 100 |
| EF407451.1 | Hepatitis C virus isolate 7041 polyprotein gene, complete cds | 253 | .................... | 272 | 100 |
| EF407452.1 | Hepatitis C virus isolate 2005 polyprotein gene, complete cds | 261 | .................... | 280 | 100 |
| EF407453.1 | Hepatitis C virus isolate 4035 polyprotein gene, complete cds | 277 | .................... | 296 | 100 |
| EF407454.1 | Hepatitis C virus isolate 6031 polyprotein gene, complete cds | 242 | .................... | 261 | 100 |
| EF407455.1 | Hepatitis C virus isolate 7065 polyprotein gene, complete cds | 290 | .................... | 309 | 100 |
| EF407456.1 | Hepatitis C virus isolate 4025 polyprotein gene, complete cds | 289 | .................... | 308 | 100 |
| EF407457.1 | Hepatitis C virus isolate 1003 polyprotein gene, complete cds | 134 | .................... | 153 | 100 |
| EF407460.1 | Hepatitis C virus isolate 8007 polyprotein gene, complete cds | 280 | .................... | 299 | 100 |
| EF407461.1 | Hepatitis C virus isolate 5004 polyprotein gene, complete cds | 310 | .................... | 329 | 100 |
| EF407465.1 | Hepatitis C virus isolate 6017 polyprotein gene, complete cds | 275 | .................... | 294 | 100 |
| EF407469.1 | Hepatitis C virus isolate 4014 polyprotein gene, complete cds | 274 | .................... | 293 | 100 |
| EF407471.1 | Hepatitis C virus isolate 5044 polyprotein gene, complete cds | 275 | .................... | 294 | 100 |
| EF407472.1 | Hepatitis C virus isolate 4034 polyprotein gene, complete cds | 276 | .................... | 295 | 100 |
| EF407475.1 | Hepatitis C virus isolate 3009 polyprotein gene, complete cds | 262 | .................... | 281 | 100 |
| EF407476.1 | Hepatitis C virus isolate 3012 polyprotein gene, complete cds | 262 | .................... | 281 | 100 |
| EF407479.1 | Hepatitis C virus isolate 4036 polyprotein gene, complete cds | 275 | .................... | 294 | 100 |
| EF407480.1 | Hepatitis C virus isolate 3043 polyprotein gene, complete cds | 277 | .................... | 296 | 100 |
| EF407482.1 | Hepatitis C virus isolate 6053 polyprotein gene, complete cds | 215 | .................... | 234 | 100 |
| EF407483.1 | Hepatitis C virus isolate 4043 polyprotein gene, complete cds | 305 | .................... | 324 | 100 |
| EF407485.1 | Hepatitis C virus isolate 7026 polyprotein gene, complete cds | 285 | .................... | 304 | 100 |
| EF407487.1 | Hepatitis C virus isolate 6057 polyprotein gene, complete cds | 277 | .................... | 296 | 100 |
| EF407488.1 | Hepatitis C virus isolate 8016 polyprotein gene, complete cds | 274 | .................... | 293 | 100 |
| EF407492.1 | Hepatitis C virus isolate 7025 polyprotein gene, complete cds | 270 | .................... | 289 | 100 |
| EF407497.1 | Hepatitis C virus isolate 5002 polyprotein gene, complete cds | 274 | .................... | 293 | 100 |
| EF407501.1 | Hepatitis C virus isolate 7055 polyprotein gene, complete cds | 303 | .................... | 322 | 100 |
| EF407502.1 | Hepatitis C virus isolate 2038 polyprotein gene, complete cds | 359 | .................... | 378 | 100 |
| EF407503.1 | Hepatitis C virus isolate 5083 polyprotein gene, complete cds | 277 | .................... | 296 | 100 |
| EF407504.1 | Hepatitis C virus isolate 8069 polyprotein gene, complete cds | 284 | .................... | 303 | 100 |
| EF589160.1 | Hepatitis C virus subtype 4f strain IFBT84 polyprotein gene, partial | 264 | .................... | 283 | 100 |
| EF589161.1 | Hepatitis C virus subtype 4f strain IFBT88 polyprotein gene, partial | 263 | .................... | 282 | 100 |
| EU155241.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V71/2002, complete | 226 | .................... | 245 | 100 |
| EU155294.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V329/2002, complet | 224 | .................... | 243 | 100 |
| EU155345.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V221/2002, complet | 238 | .................... | 257 | 100 |
| EU155350.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V256/2003, complet | 211 | .................... | 230 | 100 |
| EU155379.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V29/2003, complete | 226 | .................... | 245 | 100 |
| EU260395.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V10/2005, complete | 263 | .................... | 282 | 100 |
| EU362876.1 | Hepatitis C virus isolate 1013_FU24 polyprotein (pol) gene, complete | 289 | .................... | 308 | 100 |
| EU362877.1 | Hepatitis C virus isolate 1024_FU24 polyprotein (pol) gene, complete | 235 | .................... | 254 | 100 |
| EU362878.1 | Hepatitis C virus isolate 1030_FU24 polyprotein (pol) gene, partial c | 290 | .................... | 309 | 100 |
| EU362879.1 | Hepatitis C virus isolate 2005_FU24 polyprotein (pol) gene, partial c | 289 | .................... | 308 | 100 |
| EU362880.1 | Hepatitis C virus isolate 2011_FU24 polyprotein (pol) gene, partial c | 251 | .................... | 270 | 100 |
| EU362881.1 | Hepatitis C virus isolate 2027_FU24 polyprotein (pol) gene, partial c | 291 | .................... | 310 | 100 |
| EU362882.1 | Hepatitis C virus isolate 3005_FU24 polyprotein (pol) gene, complete | 249 | .................... | 268 | 100 |
| EU362883.1 | Hepatitis C virus isolate 4025_FU24 polyprotein (pol) gene, partial c | 289 | .................... | 308 | 100 |
| EU362884.1 | Hepatitis C virus isolate 4035_FU24 polyprotein (pol) gene, complete | 292 | .................... | 311 | 100 |
| EU362885.1 | Hepatitis C virus isolate 5009_FU24 polyprotein (pol) gene, partial c | 248 | .................... | 267 | 100 |
| EU362886.1 | Hepatitis C virus isolate 5014_FU24 polyprotein (pol) gene, complete | 252 | .................... | 271 | 100 |
| EU362887.1 | Hepatitis C virus isolate 6020_FU24 polyprotein (pol) gene, complete | 248 | .................... | 267 | 100 |
| EU362890.1 | Hepatitis C virus isolate 7002_FU24 polyprotein (pol) gene, partial c | 289 | .................... | 308 | 100 |
| EU362891.1 | Hepatitis C virus isolate 7003_FU24 polyprotein (pol) gene, partial c | 252 | .................... | 271 | 100 |
| EU362892.1 | Hepatitis C virus isolate 7012_FU24 polyprotein (pol) gene, complete | 275 | .................... | 294 | 100 |
| EU362893.1 | Hepatitis C virus isolate 7040_FU24 polyprotein (pol) gene, complete | 238 | .................... | 257 | 100 |
| EU362893.1 | Hepatitis C virus isolate 7040_FU24 polyprotein (pol) gene, complete | 2543 | ............________ | 2532 | 60 |
| EU362894.1 | Hepatitis C virus isolate 7041_FU24 polyprotein (pol) gene, partial c | 227 | .................... | 246 | 100 |
| EU362895.1 | Hepatitis C virus isolate 7043_FU24 polyprotein (pol) gene, complete | 248 | .................... | 267 | 100 |
| EU362896.1 | Hepatitis C virus isolate 7046_FU24 polyprotein (pol) gene, complete | 289 | .................... | 308 | 100 |
| EU362897.1 | Hepatitis C virus isolate 7065_FU24 polyprotein (pol) gene, complete | 289 | .................... | 308 | 100 |
| EU362898.1 | Hepatitis C virus isolate 8012_FU24 polyprotein (pol) gene, complete | 234 | .................... | 253 | 100 |
| EU362899.1 | Hepatitis C virus isolate 1013q polyprotein (pol) gene, partial cds | 291 | .................... | 310 | 100 |
| EU362900.1 | Hepatitis C virus isolate 1030q polyprotein (pol) gene, partial cds | 290 | .................... | 309 | 100 |
| EU362901.1 | Hepatitis C virus isolate 2011q polyprotein (pol) gene, complete cds | 252 | .................... | 271 | 100 |
| EU362902.1 | Hepatitis C virus isolate 2027q polyprotein (pol) gene, partial cds | 290 | .................... | 309 | 100 |
| EU362903.1 | Hepatitis C virus isolate 4025q polyprotein (pol) gene, partial cds | 289 | .................... | 308 | 100 |
| EU362907.1 | Hepatitis C virus isolate 7002q polyprotein (pol) gene, complete cds | 278 | .................... | 297 | 100 |
| EU363761.1 | Recombinant Hepatitis C virus H77C/JFH1, complete genome | 329 | .................... | 348 | 100 |
| EU239713.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V316/2001, complet | 278 | .................... | 297 | 100 |
| EU239714.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V417/2001, complet | 279 | .................... | 298 | 100 |
| EU239715.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V423/2003, complet | 256 | .................... | 275 | 100 |
| EU239716.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V431/2002, complet | 247 | .................... | 266 | 100 |
| EU250017.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V508/2001, complet | 247 | .................... | 266 | 100 |
| EU260396.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V11/2004, complete | 233 | .................... | 252 | 100 |
| EU234061.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V126/1991, complet | 278 | .................... | 297 | 100 |
| EU234062.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V135/1992, complet | 278 | .................... | 297 | 100 |
| EU234063.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V177/1992, complet | 251 | .................... | 270 | 100 |
| EU155213.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V101/2004, complet | 259 | .................... | 278 | 100 |
| EU155214.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V104/2005, complet | 256 | .................... | 275 | 100 |
| EU155215.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V105/2004, complet | 225 | .................... | 244 | 100 |
| EU155216.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V115/2001, complet | 250 | .................... | 269 | 100 |
| EU155217.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V142/2004, complet | 278 | .................... | 297 | 100 |
| EU155218.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V145/2005, complet | 279 | .................... | 298 | 100 |
| EU155219.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V146/2002, complet | 278 | .................... | 297 | 100 |
| EU155220.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V147/2004, complet | 264 | .................... | 283 | 100 |
| EU155221.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V148/2004, complet | 278 | .................... | 297 | 100 |
| EU155222.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V150/2004, complet | 278 | .................... | 297 | 100 |
| EU155223.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V151/2002, complet | 278 | .................... | 297 | 100 |
| EU155224.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V152/2003, complet | 278 | .................... | 297 | 100 |
| EU155225.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V155/2003, complet | 279 | .................... | 298 | 100 |
| EU155226.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V156/2004, complet | 278 | .................... | 297 | 100 |
| EU155227.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V157/2003, complet | 278 | .................... | 297 | 100 |
| EU155228.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V158/2003, complet | 278 | .................... | 297 | 100 |
| EU155229.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V159/2004, complet | 278 | .................... | 297 | 100 |
| EU155230.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V160/2002, complet | 278 | .................... | 297 | 100 |
| EU155231.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V163/2002, complet | 278 | .................... | 297 | 100 |
| EU155232.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V164/2002, complet | 279 | .................... | 298 | 100 |
| EU155233.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V445/2006, complet | 257 | .................... | 276 | 100 |
| EU155234.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V447/2006, complet | 279 | .................... | 298 | 100 |
| EU155235.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V449/2006, complet | 278 | .................... | 297 | 100 |
| EU155236.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V450/2006, complet | 221 | .................... | 240 | 100 |
| EU155237.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V457/2006, complet | 271 | .................... | 290 | 100 |
| EU155238.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V465/2007, complet | 256 | .................... | 275 | 100 |
| EU155239.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V54/2004, complete | 248 | .................... | 267 | 100 |
| EU155240.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V68/2004, complete | 248 | .................... | 267 | 100 |
| EU155242.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V73/2004, complete | 247 | .................... | 266 | 100 |
| EU155243.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V86/2005, complete | 225 | .................... | 244 | 100 |
| EU155244.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V90/2005, complete | 271 | .................... | 290 | 100 |
| EU155245.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V91/2003, complete | 248 | .................... | 267 | 100 |
| EU155246.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V93/2003, complete | 249 | .................... | 268 | 100 |
| EU482831.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V25/2003, complete | 236 | .................... | 255 | 100 |
| EU482832.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V33/2004, complete | 240 | .................... | 259 | 100 |
| EU482833.1 | Hepatitis C virus subtype 1b isolate HCV-1b/DE/BID-V503/2003, complet | 278 | .................... | 297 | 100 |
| EU482834.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V422/2002, complet | 212 | .................... | 231 | 100 |
| EU482835.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V427/2002, complet | 263 | .................... | 282 | 100 |
| EU482836.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V506/2002, complet | 261 | .................... | 280 | 100 |
| EU482837.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V17/2004, complete | 247 | .................... | 266 | 100 |
| EU482838.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V361/2006, complet | 262 | .................... | 281 | 100 |
| EU482839.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V370/2006, complet | 278 | .................... | 297 | 100 |
| EU482840.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V386/2004, complet | 268 | .................... | 287 | 100 |
| EU482841.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V387/2004, complet | 263 | .................... | 282 | 100 |
| EU482842.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V389/2006, complet | 235 | .................... | 254 | 100 |
| EU482843.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V435/2005, complet | 257 | .................... | 276 | 100 |
| EU482844.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V436/2006, complet | 264 | .................... | 283 | 100 |
| EU482845.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V438/2006, complet | 263 | .................... | 282 | 100 |
| EU482846.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V439/2000, complet | 257 | .................... | 276 | 100 |
| EU482847.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V5/2004, complete | 247 | .................... | 266 | 100 |
| EU482848.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V9/2005, complete | 232 | .................... | 251 | 100 |
| EU482849.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V138/1989, complet | 278 | .................... | 297 | 100 |
| EU482850.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V186/1990, complet | 225 | .................... | 244 | 100 |
| EU482852.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V217/1989, complet | 247 | .................... | 266 | 100 |
| EU482853.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V227/2005, complet | 249 | .................... | 268 | 100 |
| EU482854.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V242/2001, complet | 247 | .................... | 266 | 100 |
| EU482854.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V242/2001, complet | 7482 | _......cg.........__ | 7466 | 75 |
| EU482855.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V249/2002, complet | 241 | .................... | 260 | 100 |
| EU482856.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V250/2002, complet | 248 | .................... | 267 | 100 |
| EU482857.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V263/2005, complet | 247 | .................... | 266 | 100 |
| EU482858.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V271/2006, complet | 254 | .................... | 273 | 100 |
| EU482859.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V272/2003, complet | 278 | .................... | 297 | 100 |
| EU482860.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V302/2003, complet | 278 | .................... | 297 | 100 |
| EU482861.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V446/2006, complet | 256 | .................... | 275 | 100 |
| EU482862.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V454/2006, complet | 256 | .................... | 275 | 100 |
| EU482863.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V456/2006, complet | 260 | .................... | 279 | 100 |
| EU482864.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V459/2006, complet | 263 | .................... | 282 | 100 |
| EU482865.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V46/2003, complete | 236 | .................... | 255 | 100 |
| EU482866.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V460/2006, complet | 263 | .................... | 282 | 100 |
| EU482867.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V461/2006, complet | 263 | .................... | 282 | 100 |
| EU482868.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V69/2002, complete | 247 | .................... | 266 | 100 |
| EU482869.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V70/2002, complete | 247 | .................... | 266 | 100 |
| EU482870.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V75/2004, complete | 271 | .................... | 290 | 100 |
| EU482871.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V77/2002, complete | 239 | .................... | 258 | 100 |
| EU482872.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V261/2004, complet | 256 | .................... | 275 | 100 |
| EU482873.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V28/2003, complete | 241 | .................... | 260 | 100 |
| EU482874.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V287/2005, complet | 278 | .................... | 297 | 100 |
| EU482875.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V310/2005, complet | 278 | .................... | 297 | 100 |
| EU482876.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V330/2002, complet | 256 | .................... | 275 | 100 |
| EU482877.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V342/2001, complet | 278 | .................... | 297 | 100 |
| EU482878.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V19/2004, complete | 256 | .................... | 275 | 100 |
| EU482879.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V372/2006, complet | 278 | .................... | 297 | 100 |
| EU482880.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V373/2006, complet | 278 | .................... | 297 | 100 |
| EU482881.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V383/2003, complet | 278 | .................... | 297 | 100 |
| EU482883.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V153/2005, complet | 278 | .................... | 297 | 100 |
| EU482884.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V38/2004, complete | 14 | .................... | 33 | 100 |
| EU482885.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V448/2006, complet | 278 | .................... | 297 | 100 |
| EU482886.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V458/2006, complet | 279 | .................... | 298 | 100 |
| EU482887.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V66/2002, complete | 225 | .................... | 244 | 100 |
| EU482888.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V123/1992, complet | 278 | .................... | 297 | 100 |
| EU482889.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V179/1990, complet | 257 | .................... | 276 | 100 |
| EU155247.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1/2005, complete | 254 | .................... | 273 | 100 |
| EU155248.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V336/2006, complet | 248 | .................... | 267 | 100 |
| EU155249.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V337/2006, complet | 247 | .................... | 266 | 100 |
| EU155250.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V358/2006, complet | 255 | .................... | 274 | 100 |
| EU155251.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V359/2006, complet | 241 | .................... | 260 | 100 |
| EU155252.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V362/2006, complet | 247 | .................... | 266 | 100 |
| EU155253.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V363/2006, complet | 278 | .................... | 297 | 100 |
| EU155254.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V365/2006, complet | 279 | .................... | 298 | 100 |
| EU155255.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V366/2006, complet | 278 | .................... | 297 | 100 |
| EU155256.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V367/2006, complet | 278 | .................... | 297 | 100 |
| EU155257.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V369/2006, complet | 278 | .................... | 297 | 100 |
| EU155258.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V371/2006, complet | 278 | .................... | 297 | 100 |
| EU155259.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V374/2006, complet | 278 | .................... | 297 | 100 |
| EU155260.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V375/2006, complet | 278 | .................... | 297 | 100 |
| EU155261.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V379/2005, complet | 279 | .................... | 298 | 100 |
| EU155262.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V381/2001, complet | 278 | .................... | 297 | 100 |
| EU155263.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V384/2005, complet | 278 | .................... | 297 | 100 |
| EU155264.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V385/2006, complet | 256 | .................... | 275 | 100 |
| EU155265.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V388/2005, complet | 250 | .................... | 269 | 100 |
| EU155266.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V390/2006, complet | 199 | .................... | 218 | 100 |
| EU155267.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V391/2006, complet | 236 | .................... | 255 | 100 |
| EU155268.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V396/2006, complet | 225 | .................... | 244 | 100 |
| EU155269.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V398/2006, complet | 249 | .................... | 268 | 100 |
| EU155270.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V399/2006, complet | 247 | .................... | 266 | 100 |
| EU155271.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V401/2006, complet | 252 | .................... | 271 | 100 |
| EU155272.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V404/2006, complet | 226 | .................... | 245 | 100 |
| EU155273.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V406/2006, complet | 199 | .................... | 218 | 100 |
| EU155274.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V407/2006, complet | 201 | .................... | 220 | 100 |
| EU155276.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V432/2002, complet | 249 | .................... | 268 | 100 |
| EU155277.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V434/2003, complet | 225 | .................... | 244 | 100 |
| EU155278.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V437/2006, complet | 240 | .................... | 259 | 100 |
| EU155279.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V441/2001, complet | 278 | .................... | 297 | 100 |
| EU155280.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V442/2001, complet | 278 | .................... | 297 | 100 |
| EU155281.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V512/2005, complet | 278 | .................... | 297 | 100 |
| EU155282.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V696/2006, complet | 247 | .................... | 266 | 100 |
| EU155283.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V698/2006, complet | 263 | .................... | 282 | 100 |
| EU155284.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V317/2001, complet | 264 | .................... | 283 | 100 |
| EU155285.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V318/2001, complet | 238 | .................... | 257 | 100 |
| EU155286.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V319/2001, complet | 225 | .................... | 244 | 100 |
| EU155287.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V320/2001, complet | 285 | .................... | 304 | 100 |
| EU155288.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V322/2002, complet | 247 | .................... | 266 | 100 |
| EU155289.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V323/2001, complet | 256 | .................... | 275 | 100 |
| EU155290.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V325/2001, complet | 235 | .................... | 254 | 100 |
| EU155291.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V326/2002, complet | 249 | .................... | 268 | 100 |
| EU155292.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V327/2001, complet | 257 | .................... | 276 | 100 |
| EU155293.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V328/2001, complet | 200 | .................... | 219 | 100 |
| EU155295.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V331/2002, complet | 249 | .................... | 268 | 100 |
| EU155296.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V332/2002, complet | 246 | .................... | 265 | 100 |
| EU155297.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V333/2002, complet | 246 | .................... | 265 | 100 |
| EU155298.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V334/2002, complet | 260 | .................... | 279 | 100 |
| EU155299.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V335/2003, complet | 246 | .................... | 265 | 100 |
| EU155300.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V341/2003, complet | 277 | .................... | 296 | 100 |
| EU155301.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V344/2001, complet | 278 | .................... | 297 | 100 |
| EU155302.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V345/2001, complet | 278 | .................... | 297 | 100 |
| EU155303.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V346/2001, complet | 278 | .................... | 297 | 100 |
| EU155304.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V347/2003, complet | 7 | .................... | 26 | 100 |
| EU155305.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V350/2002, complet | 278 | .................... | 297 | 100 |
| EU155306.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V352/2002, complet | 278 | .................... | 297 | 100 |
| EU155307.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V353/2002, complet | 279 | .................... | 298 | 100 |
| EU155308.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V354/2003, complet | 278 | .................... | 297 | 100 |
| EU155309.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V356/2003, complet | 245 | .................... | 264 | 100 |
| EU155310.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V357/2004, complet | 245 | .................... | 264 | 100 |
| EU155311.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V411/2003, complet | 256 | .................... | 275 | 100 |
| EU155312.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V412/2000, complet | 238 | .................... | 257 | 100 |
| EU155313.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V413/2003, complet | 238 | .................... | 257 | 100 |
| EU155314.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V414/2004, complet | 204 | .................... | 223 | 100 |
| EU155315.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V416/2001, complet | 278 | .................... | 297 | 100 |
| EU155316.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V419/2002, complet | 278 | .................... | 297 | 100 |
| EU155317.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V420/2002, complet | 278 | .................... | 297 | 100 |
| EU155318.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V421/2005, complet | 278 | .................... | 297 | 100 |
| EU155319.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V424/2002, complet | 208 | .................... | 227 | 100 |
| EU155320.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V425/2001, complet | 201 | .................... | 220 | 100 |
| EU155321.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V426/2001, complet | 204 | .................... | 223 | 100 |
| EU155322.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V428/2001, complet | 244 | .................... | 263 | 100 |
| EU155323.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V429/2002, complet | 241 | .................... | 260 | 100 |
| EU155324.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V121/1992, complet | 278 | .................... | 297 | 100 |
| EU155325.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V122/1991, complet | 278 | .................... | 297 | 100 |
| EU155326.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V124/1992, complet | 278 | .................... | 297 | 100 |
| EU155327.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V125/1992, complet | 271 | .................... | 290 | 100 |
| EU155328.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V127/1992, complet | 278 | .................... | 297 | 100 |
| EU155329.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V128/1992, complet | 278 | .................... | 297 | 100 |
| EU155330.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V130/1994, complet | 300 | .................... | 319 | 100 |
| EU155331.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V131/1990, complet | 278 | .................... | 297 | 100 |
| EU155332.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V132/1996, complet | 278 | .................... | 297 | 100 |
| EU155333.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V133/1989, complet | 267 | .................... | 286 | 100 |
| EU155334.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V134/1990, complet | 278 | .................... | 297 | 100 |
| EU155335.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V136/1992, complet | 278 | .................... | 297 | 100 |
| EU155336.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V139/1992, complet | 278 | .................... | 297 | 100 |
| EU155337.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V141/1990, complet | 278 | .................... | 297 | 100 |
| EU155338.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V169/1996, complet | 248 | .................... | 267 | 100 |
| EU155339.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V172/1990, complet | 225 | .................... | 244 | 100 |
| EU155340.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V185/1991, complet | 225 | .................... | 244 | 100 |
| EU155341.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V192/1992, complet | 258 | .................... | 277 | 100 |
| EU155342.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V197/1989, complet | 225 | .................... | 244 | 100 |
| EU155343.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V214/1996, complet | 249 | .................... | 268 | 100 |
| EU155344.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V216/1990, complet | 236 | .................... | 255 | 100 |
| EU155346.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V236/2005, complet | 252 | .................... | 271 | 100 |
| EU155348.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V240/2005, complet | 239 | .................... | 258 | 100 |
| EU155349.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V246/2005, complet | 237 | .................... | 256 | 100 |
| EU155351.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V257/2003, complet | 251 | .................... | 270 | 100 |
| EU155352.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V262/2004, complet | 256 | .................... | 275 | 100 |
| EU155353.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V267/2005, complet | 248 | .................... | 267 | 100 |
| EU155354.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V269/2005, complet | 255 | .................... | 274 | 100 |
| EU155355.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V270/2006, complet | 254 | .................... | 273 | 100 |
| EU155356.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V273/2003, complet | 278 | .................... | 297 | 100 |
| EU155357.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V275/2003, complet | 278 | .................... | 297 | 100 |
| EU155358.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V276/2004, complet | 278 | .................... | 297 | 100 |
| EU155359.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V277/2002, complet | 279 | .................... | 298 | 100 |
| EU155360.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V278/2003, complet | 278 | .................... | 297 | 100 |
| EU155361.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V281/2004, complet | 278 | .................... | 297 | 100 |
| EU155362.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V282/2004, complet | 278 | .................... | 297 | 100 |
| EU155363.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V285/2005, complet | 278 | .................... | 297 | 100 |
| EU155364.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V288/2006, complet | 278 | .................... | 297 | 100 |
| EU155365.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V289/2006, complet | 278 | .................... | 297 | 100 |
| EU155366.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V294/2002, complet | 278 | .................... | 297 | 100 |
| EU155367.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V295/2002, complet | 278 | .................... | 297 | 100 |
| EU155368.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V296/2001, complet | 278 | .................... | 297 | 100 |
| EU155369.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V297/2002, complet | 278 | .................... | 297 | 100 |
| EU155370.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V300/2005, complet | 278 | .................... | 297 | 100 |
| EU155371.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V301/2005, complet | 278 | .................... | 297 | 100 |
| EU155372.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V306/2004, complet | 278 | .................... | 297 | 100 |
| EU155373.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V307/2005, complet | 278 | .................... | 297 | 100 |
| EU155374.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V308/2005, complet | 300 | .................... | 319 | 100 |
| EU155375.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V309/2006, complet | 278 | .................... | 297 | 100 |
| EU155376.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V311/2006, complet | 278 | .................... | 297 | 100 |
| EU155377.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V313/2006, complet | 278 | .................... | 297 | 100 |
| EU155378.2 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V26/2003, complete | 187 | .................... | 206 | 100 |
| EU155380.2 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V35/2004, complete | 235 | .................... | 254 | 100 |
| EU155381.2 | Hepatitis C virus subtype 1b isolate HCV-1b/DE/BID-V502/2004, complet | 278 | .................... | 297 | 100 |
| EU155382.2 | Hepatitis C virus subtype 1b isolate HCV-1b/DE/BID-V504/2003, complet | 278 | .................... | 297 | 100 |
| EU234065.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V212/1990, complet | 225 | .................... | 244 | 100 |
| AB426117.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 330 | .................... | 349 | 100 |
| EU529676.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V39/2004, complete | 262 | .................... | 281 | 100 |
| EU529677.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V52/2006, complete | 258 | .................... | 277 | 100 |
| EU529678.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V63/2005, complete | 244 | .................... | 263 | 100 |
| EU529679.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V76/2002, complete | 243 | .................... | 262 | 100 |
| EU529680.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V80/2002, complete | 261 | .................... | 280 | 100 |
| EU529681.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V251/2005, complet | 246 | .................... | 265 | 100 |
| EU569722.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V215/1989, complet | 264 | .................... | 283 | 100 |
| EU569723.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V13/2005, complete | 249 | .................... | 268 | 100 |
| EU595697.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V507/2001, complet | 246 | .................... | 265 | 100 |
| EU595697.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V507/2001, complet | 2551 | ............________ | 2540 | 60 |
| EU595698.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V44/2001, complete | 247 | .................... | 266 | 100 |
| EU595699.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V78/2001, complete | 239 | .................... | 258 | 100 |
| EU408327.1 | Hepatitis C virus isolate 535318 polyprotein precursor, gene, complet | 327 | .................... | 346 | 100 |
| AB435162.2 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 330 | .................... | 349 | 100 |
| EU660383.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V100/2004, complet | 256 | .................... | 275 | 100 |
| EU660384.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V55/2005, complete | 278 | .................... | 297 | 100 |
| EU660385.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V258/2003, complet | 239 | .................... | 258 | 100 |
| EU660386.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V355/2006, complet | 278 | .................... | 297 | 100 |
| EU660387.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V701/2003, complet | 247 | .................... | 266 | 100 |
| EU660388.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V154/2001, complet | 279 | .................... | 298 | 100 |
| EU687193.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V1562/2005, comple | 225 | .................... | 244 | 100 |
| EU687194.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V1563/2004, comple | 257 | .................... | 276 | 100 |
| EU687195.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V1564/2007, comple | 264 | .................... | 283 | 100 |
| EU255927.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V222/2003, complet | 251 | .................... | 270 | 100 |
| EU255928.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V231/2003, complet | 256 | .................... | 275 | 100 |
| EU255929.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V233/2004, complet | 256 | .................... | 275 | 100 |
| EU255929.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V233/2004, complet | 7490 | __.....cg.........__ | 7475 | 70 |
| EU255930.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V237/2005, complet | 256 | .................... | 275 | 100 |
| EU255931.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V108/2003, complet | 256 | .................... | 275 | 100 |
| EU255932.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V111/2005, complet | 256 | .................... | 275 | 100 |
| EU255933.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V112/2003, complet | 238 | .................... | 257 | 100 |
| EU255934.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V453/2006, complet | 264 | .................... | 283 | 100 |
| EU255935.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V462/2007, complet | 260 | .................... | 279 | 100 |
| EU255936.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V510/2006, complet | 257 | .................... | 276 | 100 |
| EU255937.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V700/2006, complet | 247 | .................... | 266 | 100 |
| EU255938.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V88/2003, complete | 262 | .................... | 281 | 100 |
| EU255939.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V408/2006, complet | 249 | .................... | 268 | 100 |
| EU255940.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V433/2006, complet | 263 | .................... | 282 | 100 |
| EU255941.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V697/2006, complet | 262 | .................... | 281 | 100 |
| EU255942.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V699/2007, complet | 262 | .................... | 281 | 100 |
| EU255943.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V223/2003, complet | 249 | .................... | 268 | 100 |
| EU255944.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V224/2003, complet | 232 | .................... | 251 | 100 |
| EU255945.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V225/2004, complet | 249 | .................... | 268 | 100 |
| EU255946.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V226/2005, complet | 257 | .................... | 276 | 100 |
| EU255947.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V228/2006, complet | 263 | .................... | 282 | 100 |
| EU255948.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V230/2003, complet | 258 | .................... | 277 | 100 |
| EU255949.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V235/2005, complet | 256 | .................... | 275 | 100 |
| EU255951.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V245/2005, complet | 262 | .................... | 281 | 100 |
| EU255953.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V248/2006, complet | 253 | .................... | 272 | 100 |
| EU255954.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V252/2002, complet | 255 | .................... | 274 | 100 |
| EU255955.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V254/2002, complet | 239 | .................... | 258 | 100 |
| EU255956.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V259/2003, complet | 257 | .................... | 276 | 100 |
| EU255957.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V260/2004, complet | 278 | .................... | 297 | 100 |
| EU255958.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V265/2005, complet | 256 | .................... | 275 | 100 |
| EU255959.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V268/2003, complet | 223 | .................... | 242 | 100 |
| EU255960.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V312/2006, complet | 278 | .................... | 297 | 100 |
| EU256059.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V220/2005, complet | 278 | .................... | 297 | 100 |
| EU256060.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V360/2006, complet | 250 | .................... | 269 | 100 |
| EU256061.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V364/2006, complet | 278 | .................... | 297 | 100 |
| EU256062.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V368/2006, complet | 278 | .................... | 297 | 100 |
| EU256064.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V376/2006, complet | 278 | .................... | 297 | 100 |
| EU256065.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V377/2006, complet | 278 | .................... | 297 | 100 |
| EU256066.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V382/2003, complet | 279 | .................... | 298 | 100 |
| EU256067.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V402/2006, complet | 257 | .................... | 276 | 100 |
| EU256068.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V405/2006, complet | 250 | .................... | 269 | 100 |
| EU256086.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V110/2003, complet | 228 | .................... | 247 | 100 |
| EU256087.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V114/2001, complet | 225 | .................... | 244 | 100 |
| EU256088.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V149/2003, complet | 278 | .................... | 297 | 100 |
| EU256089.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V161/2002, complet | 278 | .................... | 297 | 100 |
| EU256090.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V162/2002, complet | 278 | .................... | 297 | 100 |
| EU256092.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V463/2006, complet | 278 | .................... | 297 | 100 |
| EU256094.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V74/2004, complete | 257 | .................... | 276 | 100 |
| EU256095.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V81/2002, complete | 260 | .................... | 279 | 100 |
| EU256096.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V321/2001, complet | 250 | .................... | 269 | 100 |
| EU256097.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V324/2001, complet | 256 | .................... | 275 | 100 |
| EU256098.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V343/2002, complet | 278 | .................... | 297 | 100 |
| EU256099.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V348/2002, complet | 278 | .................... | 297 | 100 |
| EU256100.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V349/2002, complet | 278 | .................... | 297 | 100 |
| EU256101.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V351/2002, complet | 278 | .................... | 297 | 100 |
| EU256102.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V415/2001, complet | 278 | .................... | 297 | 100 |
| EU256103.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V418/2001, complet | 278 | .................... | 297 | 100 |
| EU256104.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V430/2005, complet | 247 | .................... | 266 | 100 |
| EU256105.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V505/2001, complet | 280 | .................... | 299 | 100 |
| EU256106.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V32/2004, complete | 248 | .................... | 267 | 100 |
| EU155347.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V239/2005, complet | 241 | .................... | 260 | 100 |
| EU255993.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V102/2004, complet | 256 | .................... | 275 | 100 |
| EU255995.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V106/2004, complet | 255 | .................... | 274 | 100 |
| EU255996.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V107/2003, complet | 261 | .................... | 280 | 100 |
| EU255997.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V109/2003, complet | 227 | .................... | 246 | 100 |
| EU255998.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V113/2001, complet | 257 | .................... | 276 | 100 |
| EU255999.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V116/2002, complet | 243 | .................... | 262 | 100 |
| EU256000.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V143/2003, complet | 278 | .................... | 297 | 100 |
| EU256001.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V144/2002, complet | 278 | .................... | 297 | 100 |
| EU256002.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V41/2006, complete | 271 | .................... | 290 | 100 |
| EU256003.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V444/2006, complet | 263 | .................... | 282 | 100 |
| EU256004.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V45/2005, complete | 237 | .................... | 256 | 100 |
| EU256005.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V451/2006, complet | 258 | .................... | 277 | 100 |
| EU256006.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V452/2006, complet | 264 | .................... | 283 | 100 |
| EU256007.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V464/2006, complet | 246 | .................... | 265 | 100 |
| EU256008.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V47/2002, complete | 225 | .................... | 244 | 100 |
| EU256009.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V49/2004, complete | 243 | .................... | 262 | 100 |
| EU256010.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V50/2002, complete | 225 | .................... | 244 | 100 |
| EU256011.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V51/2004, complete | 225 | .................... | 244 | 100 |
| EU256012.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V511/2006, complet | 264 | .................... | 283 | 100 |
| EU256013.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V53/2004, complete | 254 | .................... | 273 | 100 |
| EU256014.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V56/2004, complete | 225 | .................... | 244 | 100 |
| EU256015.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V57/2004, complete | 248 | .................... | 267 | 100 |
| EU256017.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V59/2005, complete | 252 | .................... | 271 | 100 |
| EU256018.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V60/2002, complete | 245 | .................... | 264 | 100 |
| EU256019.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V61/2001, complete | 252 | .................... | 271 | 100 |
| EU256020.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V62/2003, complete | 254 | .................... | 273 | 100 |
| EU256021.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V64/2003, complete | 248 | .................... | 267 | 100 |
| EU256022.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V65/2003, complete | 247 | .................... | 266 | 100 |
| EU256023.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V67/2003, complete | 256 | .................... | 275 | 100 |
| EU256024.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V72/2006, complete | 225 | .................... | 244 | 100 |
| EU256025.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V79/2002, complete | 226 | .................... | 245 | 100 |
| EU256026.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V82/2002, complete | 261 | .................... | 280 | 100 |
| EU256027.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V83/2003, complete | 263 | .................... | 282 | 100 |
| EU256028.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V84/2001, complete | 256 | .................... | 275 | 100 |
| EU256029.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V85/2001, complete | 243 | .................... | 262 | 100 |
| EU256030.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V87/2002, complete | 239 | .................... | 258 | 100 |
| EU256031.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V89/2006, complete | 254 | .................... | 273 | 100 |
| EU256032.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V92/2003, complete | 254 | .................... | 273 | 100 |
| EU256033.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V94/2005, complete | 257 | .................... | 276 | 100 |
| EU256034.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V95/2006, complete | 257 | .................... | 276 | 100 |
| EU256035.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V96/2004, complete | 256 | .................... | 275 | 100 |
| EU256036.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V97/2004, complete | 256 | .................... | 275 | 100 |
| EU256038.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V99/2004, complete | 261 | .................... | 280 | 100 |
| EU256039.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V16/2004, complete | 249 | .................... | 268 | 100 |
| EU256040.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V18/2004, complete | 256 | .................... | 275 | 100 |
| EU256041.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V2/2005, complete | 261 | .................... | 280 | 100 |
| EU256043.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V3/2005, complete | 225 | .................... | 244 | 100 |
| EU256044.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V378/2001, complet | 235 | .................... | 254 | 100 |
| EU256045.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V380/2003, complet | 278 | .................... | 297 | 100 |
| EU256046.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V392/2006, complet | 256 | .................... | 275 | 100 |
| EU256047.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V393/2006, complet | 256 | .................... | 275 | 100 |
| EU256048.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V394/2006, complet | 256 | .................... | 275 | 100 |
| EU256049.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V395/2006, complet | 256 | .................... | 275 | 100 |
| EU256050.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V397/2006, complet | 257 | .................... | 276 | 100 |
| EU256051.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V4/2005, complete | 252 | .................... | 271 | 100 |
| EU256052.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V403/2006, complet | 255 | .................... | 274 | 100 |
| EU256054.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V443/2001, complet | 278 | .................... | 297 | 100 |
| EU256055.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V6/2001, complete | 252 | .................... | 271 | 100 |
| EU256056.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V7/2003, complete | 227 | .................... | 246 | 100 |
| EU256057.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V702/2006, complet | 264 | .................... | 283 | 100 |
| EU256058.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V8/2005, complete | 242 | .................... | 261 | 100 |
| EU256069.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V229/2006, complet | 237 | .................... | 256 | 100 |
| EU256070.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V232/2003, complet | 249 | .................... | 268 | 100 |
| EU256071.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V234/2004, complet | 225 | .................... | 244 | 100 |
| EU256072.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V238/2005, complet | 237 | .................... | 256 | 100 |
| EU256074.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V264/2005, complet | 254 | .................... | 273 | 100 |
| EU256075.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V279/2004, complet | 278 | .................... | 297 | 100 |
| EU256076.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V280/2004, complet | 278 | .................... | 297 | 100 |
| EU256077.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V283/2005, complet | 278 | .................... | 297 | 100 |
| EU256078.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V284/2005, complet | 280 | .................... | 299 | 100 |
| EU256079.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V286/2005, complet | 279 | .................... | 298 | 100 |
| EU256080.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V292/2002, complet | 278 | .................... | 297 | 100 |
| EU256081.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V293/2002, complet | 278 | .................... | 297 | 100 |
| EU256082.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V298/2005, complet | 279 | .................... | 298 | 100 |
| EU256083.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V299/2005, complet | 278 | .................... | 297 | 100 |
| EU256084.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V303/2003, complet | 278 | .................... | 297 | 100 |
| EU255961.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V137/1991, complet | 278 | .................... | 297 | 100 |
| EU255963.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V166/1992, complet | 257 | .................... | 276 | 100 |
| EU255964.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V167/1992, complet | 240 | .................... | 259 | 100 |
| EU255965.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V168/1990, complet | 254 | .................... | 273 | 100 |
| EU255966.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V170/1997, complet | 261 | .................... | 280 | 100 |
| EU255967.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V171/1997, complet | 235 | .................... | 254 | 100 |
| EU255968.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V173/1989, complet | 240 | .................... | 259 | 100 |
| EU255969.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V174/1992, complet | 252 | .................... | 271 | 100 |
| EU255970.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V176/1992, complet | 248 | .................... | 267 | 100 |
| EU255973.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V180/1990, complet | 251 | .................... | 270 | 100 |
| EU255974.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V181/1992, complet | 254 | .................... | 273 | 100 |
| EU255975.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V183/1994, complet | 255 | .................... | 274 | 100 |
| EU255976.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V184/1992, complet | 251 | .................... | 270 | 100 |
| EU255977.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V187/1991, complet | 255 | .................... | 274 | 100 |
| EU255978.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V188/1991, complet | 244 | .................... | 263 | 100 |
| EU255979.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V189/1991, complet | 257 | .................... | 276 | 100 |
| EU255980.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V190/1990, complet | 248 | .................... | 267 | 100 |
| EU255981.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V191/1990, complet | 263 | .................... | 282 | 100 |
| EU255982.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V194/1990, complet | 254 | .................... | 273 | 100 |
| EU255983.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V195/1990, complet | 249 | .................... | 268 | 100 |
| EU255984.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V200/1990, complet | 242 | .................... | 261 | 100 |
| EU255985.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V201/1991, complet | 259 | .................... | 278 | 100 |
| EU255986.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V203/1989, complet | 257 | .................... | 276 | 100 |
| EU255987.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V205/1989, complet | 238 | .................... | 257 | 100 |
| EU255988.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V206/1995, complet | 246 | .................... | 265 | 100 |
| EU255989.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V208/1990, complet | 263 | .................... | 282 | 100 |
| EU255990.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V209/1992, complet | 255 | .................... | 274 | 100 |
| EU255991.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V210/1989, complet | 245 | .................... | 264 | 100 |
| EU255992.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V213/1992, complet | 251 | .................... | 270 | 100 |
| AM910652.2 | Hepatitis C virus subtype 1g complete genome | 302 | .................... | 321 | 100 |
| FJ024086.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1704/2007, comple | 278 | .................... | 297 | 100 |
| FJ024087.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1705/2007, comple | 257 | .................... | 276 | 100 |
| FJ024275.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1708/2007, comple | 222 | .................... | 241 | 100 |
| FJ024276.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1710/2007, comple | 222 | .................... | 241 | 100 |
| FJ024277.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1711/2007, comple | 278 | .................... | 297 | 100 |
| FJ024278.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1713/2007, comple | 224 | .................... | 243 | 100 |
| FJ024279.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1715/2007, comple | 278 | .................... | 297 | 100 |
| FJ024280.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1717/2007, comple | 239 | .................... | 258 | 100 |
| FJ024281.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1718/2007, comple | 254 | .................... | 273 | 100 |
| FJ024282.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1719/2005, comple | 242 | .................... | 261 | 100 |
| EU862823.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V24/2003, complete | 235 | .................... | 254 | 100 |
| EU862824.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V31/2004, partial | 247 | .................... | 266 | 100 |
| EU862826.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V198/1989, partial | 247 | .................... | 266 | 100 |
| EU862827.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V218/1993, partial | 247 | .................... | 266 | 100 |
| EU862835.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V509/2001, partial | 278 | .................... | 297 | 100 |
| FJ181999.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1706/2007, comple | 241 | .................... | 260 | 100 |
| FJ182000.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1712/2007, comple | 224 | .................... | 243 | 100 |
| FJ182001.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1716/2007, comple | 248 | .................... | 267 | 100 |
| FJ205867.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1709/2007, comple | 278 | .................... | 297 | 100 |
| FJ205868.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1714/2007, comple | 234 | .................... | 253 | 100 |
| FJ205869.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1720/2006, comple | 224 | .................... | 243 | 100 |
| FJ390394.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1745/2008, comple | 240 | .................... | 259 | 100 |
| FJ390395.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1747/2008, comple | 217 | .................... | 236 | 100 |
| FJ390396.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1748/2007, comple | 278 | .................... | 297 | 100 |
| FJ390397.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1749/2008, comple | 278 | .................... | 297 | 100 |
| FJ390398.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1750/2008, comple | 278 | .................... | 297 | 100 |
| FJ390399.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1751/2007, comple | 201 | .................... | 220 | 100 |
| FJ410172.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1746/2008, comple | 224 | .................... | 243 | 100 |
| EU781804.1 | Hepatitis C virus subtype 1a isolate 02-46, complete genome | 245 | .................... | 264 | 100 |
| EU781823.1 | Hepatitis C virus subtype 1a isolate 03-12, complete genome | 253 | .................... | 272 | 100 |
| EU781824.1 | Hepatitis C virus subtype 1a isolate DN14, complete genome | 237 | .................... | 256 | 100 |
| FJ478453.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V2148/1999, comple | 278 | .................... | 297 | 100 |
| AB442221.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 330 | .................... | 349 | 100 |
| AB442222.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 330 | .................... | 349 | 100 |
| FJ462431.1 | Hepatitis C virus isolate QC139, complete genome | 329 | .................... | 348 | 100 |
| FJ462432.1 | Hepatitis C virus isolate QC193, complete genome | 330 | .................... | 349 | 100 |
| FJ462433.1 | Hepatitis C virus isolate QC249, complete genome | 330 | .................... | 349 | 100 |
| FJ462434.1 | Hepatitis C virus isolate QC262, complete genome | 330 | .................... | 349 | 100 |
| FJ462435.1 | Hepatitis C virus isolate QC264, complete genome | 329 | .................... | 348 | 100 |
| FJ462436.1 | Hepatitis C virus isolate QC381, complete genome | 329 | .................... | 348 | 100 |
| FJ462437.1 | Hepatitis C virus isolate QC382, complete genome | 329 | .................... | 348 | 100 |
| FJ462438.1 | Hepatitis C virus isolate QC383, complete genome | 330 | .................... | 349 | 100 |
| FJ462439.1 | Hepatitis C virus isolate QC384, complete genome | 329 | .................... | 348 | 100 |
| FJ462440.1 | Hepatitis C virus isolate QC93, complete genome | 330 | .................... | 349 | 100 |
| FJ462441.1 | Hepatitis C virus isolate QC97, complete genome | 329 | .................... | 348 | 100 |
| GQ149768.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V2147/2002, comple | 241 | .................... | 260 | 100 |
| FJ839869.1 | Hepatitis C virus isolate QC155, complete genome | 329 | .................... | 348 | 100 |
| FJ839870.1 | Hepatitis C virus isolate QC274, complete genome | 329 | .................... | 348 | 100 |
| FN435993.1 | Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN | 331 | .................... | 350 | 100 |
| AB520610.1 | Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC | 330 | .................... | 349 | 100 |
| EU862828.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V12/2004, complete | 263 | .................... | 282 | 100 |
| EU862831.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V400/2006, complet | 248 | .................... | 267 | 100 |
| EU862832.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V27/2003, complete | 244 | .................... | 263 | 100 |
| EU862836.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V244/2003, complet | 256 | .................... | 275 | 100 |
| EU862837.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V304/2004, complet | 279 | .................... | 298 | 100 |
| EU862838.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V165/1992, complet | 267 | .................... | 286 | 100 |
| EU862839.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V175/1990, complet | 258 | .................... | 277 | 100 |
| EU862840.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V40/2003, complete | 271 | .................... | 290 | 100 |
| EU862841.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V48/2003, complete | 245 | .................... | 264 | 100 |
| GU133617.1 | Hepatitis C virus subtype 1b, complete genome | 330 | .................... | 349 | 100 |
| Y13184.1 | Hepatitis C virus genotype 5a RNA for HCV polyprotein TTCACGCAGAAAGCG | 268 | .................... | 287 | 100 |
| Y11604.1 | Hepatitis C virus type 4a RNA for HCV polyprotein | 268 | .................... | 287 | 100 |
| AF177036.1 | Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen | 329 | .................... | 348 | 100 |
| AF009606.1 | Hepatitis C virus subtype 1a polyprotein gene, complete cds | 330 | .................... | 349 | 100 |
| DQ835770.1 | Hepatitis C virus subtype 6i isolate Th602, complete genome | 327 | ..........y......... | 346 | 95 |
| DQ988076.1 | Hepatitis C virus isolate Eg7 polyprotein gene, partial cds | 248 | ..........y......... | 267 | 95 |
| D10988.1 | HPCJ8G Hepatitis C virus genome | 330 | ..........t......... | 349 | 95 |
| D90208.1 | HPCJCG Hepatitis C virus ORF gene, complete cds | 318 | ..........t......... | 337 | 95 |
| D30613.1 | HPCPP Hepatitis C virus complete genome sequence | 330 | ..........t......... | 349 | 95 |
| X76918.1 | Hepatitis C virus genes for core, envelope and NS1 proteins | 287 | ..........a......... | 306 | 95 |
| D49374.1 | HPCFG Hepatitis C virus (isolate Tr Kj) genomic RNA, complete genome | 328 | ..........a......... | 347 | 95 |
| D63822.1 | HPCJK046E2 Hepatitis C virus (isolate JK046) genomic RNA, complete gen | 327 | ..........t......... | 346 | 95 |
| D63822.1 | HPCJK046E2 Hepatitis C virus (isolate JK046) genomic RNA, complete gen | 3610 | _....c........._____ | 3597 | 65 |
| D63821.1 | HPCJK049E1 Hepatitis C virus (isolate JK049) genomic RNA, complete gen | 328 | ..........t......... | 347 | 95 |
| D45172.1 | HPCHCPO Hepatitis C virus genomic RNA for HCV polyprotein, complete cd | 330 | ..........t......... | 349 | 95 |
| D50409.1 | Hepatitis C virus (isolate BEBE1) genomic RNA, complete genome | 329 | ..........t......... | 348 | 95 |
| Y12083.1 | Hepatitis C virus genotype 6a RNA for HCV polyprotein | 272 | ..........t......... | 291 | 95 |
| U89019.1 | HCU89019 Hepatitis C virus subtype 1b, complete genome | 329 | ..........t......... | 348 | 95 |
| AF046866.1 | Hepatitis C virus subtype 3a strain CB polyprotein gene, complete cds | 328 | ..........a......... | 347 | 95 |
| D89815.1 | Hepatitis C virus genomic RNA, complete sequence | 330 | ..........t......... | 349 | 95 |
| AF064490.1 | Hepatitis C virus (isolate SA13) polyprotein gene, complete cds | 235 | ..........a......... | 254 | 95 |
| AF165045.1 | Hepatitis C virus subtype 1b strain MD1-1, complete genome | 318 | ..........t......... | 337 | 95 |
| AF165046.1 | Hepatitis C virus subtype 1b strain MD1-2, complete genome | 318 | ..........t......... | 337 | 95 |
| AF165049.1 | Hepatitis C virus subtype 1b strain MD3-1, complete genome | 318 | ..........t......... | 337 | 95 |
| AF165050.1 | Hepatitis C virus subtype 1b strain MD3-2, complete genome | 318 | ..........t......... | 337 | 95 |
| AF165053.1 | Hepatitis C virus subtype 1b strain MD5-1, complete genome | 318 | ..........t......... | 337 | 95 |
| AF165054.1 | Hepatitis C virus subtype 1b strain MD5-2, complete genome | 318 | ..........t......... | 337 | 95 |
| AF165055.1 | Hepatitis C virus subtype 1b strain MD6-1, complete genome | 318 | ..........a......... | 337 | 95 |
| AF165056.1 | Hepatitis C virus subtype 1b strain MD6-2, complete genome | 318 | ..........a......... | 337 | 95 |
| AF165062.1 | Hepatitis C virus subtype 1b strain MD9-2, complete genome | 318 | ..........t......... | 337 | 95 |
| AF169003.1 | Hepatitis C virus subtype 2a isolate G2aK1, complete genome | 329 | ..........t......... | 348 | 95 |
| AF169004.1 | Hepatitis C virus subtype 2a isolate G2aK3, complete genome | 329 | ..........t......... | 348 | 95 |
| AF238481.1 | Hepatitis C virus subtype 2a strain MD2a-1, complete genome | 295 | ..........t......... | 314 | 95 |
| AF238484.1 | Hepatitis C virus subtype 2a strain MD2a-5, complete genome | 295 | ..........t......... | 314 | 95 |
| AF238486.1 | Hepatitis C virus subtype 2b strain MD2b-1, complete genome | 293 | ..........t......... | 312 | 95 |
| AF207752.1 | Hepatitis C virus subtype 1b strain MD11, complete genome | 318 | ..........t......... | 337 | 95 |
| AF207753.1 | Hepatitis C virus subtype 1b strain MD12, complete genome | 318 | ..........t......... | 337 | 95 |
| AF207755.1 | Hepatitis C virus subtype 1b strain MD14, complete genome | 318 | ..........t......... | 337 | 95 |
| AF207757.1 | Hepatitis C virus subtype 1b strain MD16, complete genome | 318 | ..........t......... | 337 | 95 |
| AF207759.1 | Hepatitis C virus subtype 1b strain MD18, complete genome | 318 | ..........t......... | 337 | 95 |
| AF207762.1 | Hepatitis C virus subtype 1b strain MD21, complete genome | 318 | ..........t......... | 337 | 95 |
| AF207764.1 | Hepatitis C virus subtype 1b strain MD23, complete genome | 318 | ..........t......... | 337 | 95 |
| AF207765.1 | Hepatitis C virus subtype 1b strain MD24, complete genome | 318 | ..........t......... | 337 | 95 |
| AF207767.1 | Hepatitis C virus subtype 1b strain MD26, complete genome | 318 | ...t................ | 337 | 95 |
| AF207770.1 | Hepatitis C virus subtype 1b strain MD29, complete genome | 318 | ..........t......... | 337 | 95 |
| AF207771.1 | Hepatitis C virus subtype 1b strain MD30, complete genome | 318 | ..........t......... | 337 | 95 |
| AF207773.1 | Hepatitis C virus subtype 1b strain MD32, complete genome | 318 | ..........t......... | 337 | 95 |
| AJ278830.1 | Hepatitis C virus genomic RNA for polyprotein gene | 330 | ..........t......... | 349 | 95 |
| AB049088.1 | Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 | 330 | ..........t......... | 349 | 95 |
| AB049089.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT10 | 299 | ..........t......... | 318 | 95 |
| AB049090.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 299 | ..........t......... | 318 | 95 |
| AB049091.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 248 | ..........t......... | 267 | 95 |
| AB049094.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT16 | 331 | ..........t......... | 350 | 95 |
| AB049095.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT16 | 299 | ..........t......... | 318 | 95 |
| AF333324.1 | Hepatitis C virus type 1b polyprotein mRNA, complete cds | 330 | ..........t......... | 349 | 95 |
| AB047643.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 | 329 | .....a.............. | 348 | 95 |
| AB047644.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 | 329 | ..........t......... | 348 | 95 |
| AY045702.1 | Hepatitis C virus isolate HCR6, complete genome | 332 | ..........t......... | 351 | 95 |
| AY232730.1 | Hepatitis C virus clone MD2b1-1 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232731.1 | Hepatitis C virus clone MD2b1-2 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232732.1 | Hepatitis C virus clone MD2b2-1 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232733.1 | Hepatitis C virus clone MD2b2-2 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232734.1 | Hepatitis C virus clone MD2b3-1 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232735.1 | Hepatitis C virus clone MD2b3-2 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232736.1 | Hepatitis C virus clone MD2b4-1 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232737.1 | Hepatitis C virus clone MD2b4-2 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232738.1 | Hepatitis C virus clone MD2b5-1 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232739.1 | Hepatitis C virus clone MD2b5-2 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232740.1 | Hepatitis C virus clone MD2b6-1 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232741.1 | Hepatitis C virus clone MD2b6-2 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232742.1 | Hepatitis C virus clone MD2b7-1 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232743.1 | Hepatitis C virus clone MD2b7-2 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232744.1 | Hepatitis C virus clone MD2b8-1 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232745.1 | Hepatitis C virus clone MD2b8-2 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232746.1 | Hepatitis C virus clone MD2b9-1 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232747.1 | Hepatitis C virus clone MD2b9-2 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232748.1 | Hepatitis C virus clone MD2b10-1 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY232749.1 | Hepatitis C virus clone MD2b10-2 polyprotein mRNA, complete cds | 293 | ..........t......... | 312 | 95 |
| AY587845.1 | Hepatitis C virus strain RF1_2k/1b, N687 polyprotein gene, complete c | 257 | ..........t......... | 276 | 95 |
| D84263.2 | Hepatitis C virus (isolate VN235) genomic RNA, complete genome | 327 | ..........t......... | 346 | 95 |
| D84264.2 | Hepatitis C virus (isolate VN405) genomic RNA, complete genome | 327 | ..........a......... | 346 | 95 |
| D84265.2 | Hepatitis C virus (isolate VN004) genomic RNA, complete genome | 327 | ..........t......... | 346 | 95 |
| AY878652.1 | Hepatitis C virus subtype 6n isolate KM42, complete genome | 297 | ..........a......... | 316 | 95 |
| DQ155561.1 | Hepatitis C virus (isolate D54) polyprotein gene, partial cds | 302 | ..........t......... | 321 | 95 |
| DQ278894.1 | Hepatitis C virus subtype 6n isolate KM42, complete genome | 331 | ..........a......... | 350 | 95 |
| DQ314805.1 | Hepatitis C virus subtype 6e isolate GX004, complete genome | 327 | ..........t......... | 346 | 95 |
| DQ314806.1 | Hepatitis C virus subtype 6g isolate HK6554, complete genome | 327 | ..........t......... | 346 | 95 |
| DQ314806.1 | Hepatitis C virus subtype 6g isolate HK6554, complete genome | 3610 | _....c........._____ | 3597 | 65 |
| DQ278892.1 | Hepatitis C virus isolate GZ52557, complete genome | 328 | ..........t......... | 347 | 95 |
| DQ480512.1 | Hepatitis C virus subtype 6a strain 6a77, complete genome | 287 | ..........t......... | 306 | 95 |
| DQ480513.1 | Hepatitis C virus subtype 6a strain 6a35, complete genome | 287 | ..........t......... | 306 | 95 |
| DQ480514.1 | Hepatitis C virus subtype 6a strain 6a63, complete genome | 287 | ..........t......... | 306 | 95 |
| DQ480515.1 | Hepatitis C virus subtype 6a strain 6a64, complete genome | 287 | ..........t......... | 306 | 95 |
| DQ480516.1 | Hepatitis C virus subtype 6a strain 6a61, complete genome | 287 | ..........t......... | 306 | 95 |
| DQ480517.1 | Hepatitis C virus subtype 6a strain 6a73, complete genome | 287 | ..........t......... | 306 | 95 |
| DQ480518.1 | Hepatitis C virus subtype 6a strain 6a65, complete genome | 287 | ..........t......... | 306 | 95 |
| DQ480519.1 | Hepatitis C virus subtype 6a strain 6a66, complete genome | 287 | ..........t......... | 306 | 95 |
| DQ480520.1 | Hepatitis C virus subtype 6a strain 6a67, complete genome | 287 | ..........t......... | 306 | 95 |
| DQ480521.1 | Hepatitis C virus subtype 6a strain 6a69, complete genome | 287 | ..........t......... | 306 | 95 |
| DQ480522.1 | Hepatitis C virus subtype 6a strain 6a72, complete genome | 287 | ..........t......... | 306 | 95 |
| DQ480523.1 | Hepatitis C virus subtype 6a strain 6a62, complete genome | 287 | ..........t......... | 306 | 95 |
| DQ835760.1 | Hepatitis C virus subtype 6f isolate C-0044, complete genome | 327 | ..........t......... | 346 | 95 |
| DQ835761.1 | Hepatitis C virus subtype 6j isolate C-0667, complete genome | 327 | ..........t......... | 346 | 95 |
| DQ835762.1 | Hepatitis C virus subtype 6i isolate C-0159, complete genome | 327 | ..........t......... | 346 | 95 |
| DQ835764.1 | Hepatitis C virus subtype 6f isolate C-0046, complete genome | 327 | ..........t......... | 346 | 95 |
| DQ835765.1 | Hepatitis C virus subtype 6m isolate C-0185, complete genome | 327 | ..........a......... | 346 | 95 |
| DQ835766.1 | Hepatitis C virus subtype 6m isolate C-0192, complete genome | 327 | ..........t......... | 346 | 95 |
| DQ835768.1 | Hepatitis C virus subtype 6n isolate D86/93, complete genome | 327 | ..........a......... | 346 | 95 |
| DQ835769.1 | Hepatitis C virus subtype 6j isolate Th553, complete genome | 327 | ..........t......... | 346 | 95 |
| EF026073.1 | Hepatitis C virus strain RF3 2/5 polyprotein mRNA, partial cds | 307 | ..........t......... | 326 | 95 |
| AM408911.1 | Hepatitis C virus partial gene for polyprotein, recombinant 2/5, geno | 307 | ..........t......... | 326 | 95 |
| EF424625.1 | Hepatitis C virus subtype 6q isolate QC99, complete genome | 328 | ..........a......... | 347 | 95 |
| EF424626.1 | Hepatitis C virus subtype 6p isolate QC216, complete genome | 328 | ..........t......... | 347 | 95 |
| EF424627.1 | Hepatitis C virus subtype 6o isolate QC227, complete genome | 327 | ..........a......... | 346 | 95 |
| EF424628.1 | Hepatitis C virus subtype 6l isolate 537796, complete genome | 327 | ..........t......... | 346 | 95 |
| EF424629.1 | Hepatitis C virus subtype 6c isolate Th846, complete genome | 328 | ..........t......... | 347 | 95 |
| EF407470.1 | Hepatitis C virus isolate 4064 polyprotein gene, complete cds | 282 | ..........t......... | 301 | 95 |
| EF407493.1 | Hepatitis C virus isolate 3031 polyprotein gene, complete cds | 285 | ..........t......... | 304 | 95 |
| EU246930.1 | Hepatitis C virus strain D9 polyprotein gene, complete cds | 305 | ..........t......... | 324 | 95 |
| EU246933.1 | Hepatitis C virus strain D33 polyprotein gene, complete cds | 302 | ..........t......... | 321 | 95 |
| EU246935.1 | Hepatitis C virus strain TH24 polyprotein gene, complete cds | 268 | ..........t......... | 287 | 95 |
| EU234064.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V182/1990, complet | 244 | ..........a......... | 263 | 95 |
| EU482882.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V410/2006, complet | 240 | ..........a......... | 259 | 95 |
| EU155275.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V409/2006, complet | 250 | ..........a......... | 269 | 95 |
| EU408326.1 | Hepatitis C virus isolate 537798 polyprotein precursor, gene, complet | 327 | ..........t......... | 346 | 95 |
| AB429050.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: AH1 | 330 | ..........t......... | 349 | 95 |
| EU255950.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V241/2005, complet | 248 | ..........t......... | 267 | 95 |
| EU255952.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V247/2005, complet | 251 | ..........t......... | 270 | 95 |
| EU256107.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V36/2004, complete | 257 | ..........g......... | 276 | 95 |
| EU255994.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V103/2005, complet | 240 | ..........t......... | 259 | 95 |
| EU256053.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V440/2001, complet | 257 | ..........t......... | 276 | 95 |
| EU256085.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V305/2003, complet | 278 | ..........t......... | 297 | 95 |
| EU158186.1 | Hepatitis C virus isolate NK46, complete genome | 296 | ..........t......... | 315 | 95 |
| EU857431.1 | Hepatitis C virus subtype 1b isolate Whu, complete genome | 330 | ..........t......... | 349 | 95 |
| EU798760.1 | Hepatitis C virus subtype 6v isolate KMN-02 polyprotein precursor, ge | 327 | ..........t......... | 346 | 95 |
| EU798761.1 | Hepatitis C virus subtype 6v isolate KM046 polyprotein precursor, gen | 296 | ..........t......... | 315 | 95 |
| EU643834.1 | Hepatitis C virus isolate HCV-6-D140 polyprotein gene, complete cds | 54 | ..........t......... | 73 | 95 |
| EU643835.1 | Hepatitis C virus isolate HCV-6-D177 polyprotein gene, complete cds | 54 | ..........t......... | 73 | 95 |
| EU643836.1 | Hepatitis C virus isolate HCV-6-D370 polyprotein gene, complete cds | 54 | ..........t......... | 73 | 95 |
| AB442219.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 330 | ..........t......... | 349 | 95 |
| AB442220.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 330 | ..........t......... | 349 | 95 |
| FJ025854.1 | Hepatitis C virus strain P026 polyprotein gene, complete cds | 179 | ..........t......... | 198 | 95 |
| FJ025855.1 | Hepatitis C virus strain P212 polyprotein gene, complete cds | 179 | ..........t......... | 198 | 95 |
| FJ025856.1 | Hepatitis C virus strain P245 polyprotein gene, complete cds | 179 | ..........t......... | 198 | 95 |
| FJ435090.1 | Hepatitis C virus isolate KM181 genotype 6v, complete genome | 327 | ..........t......... | 346 | 95 |
| FJ407092.1 | Hepatitis C virus isolate IND-HCV-3i, complete genome | 329 | ..........a......... | 348 | 95 |
| FJ821465.1 | Hepatitis C virus strain M21-2k/1b, complete genome | 304 | ..........t......... | 323 | 95 |
| EU862834.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V37/2004, complete | 175 | ..........g......... | 194 | 95 |
| GQ275355.1 | Hepatitis C virus subtype 3a, complete genome | 328 | ..........a......... | 347 | 95 |
| AB559564.1 | Hepatitis C virus HCV gene for hepatitis C virus polyprotein, complet | 330 | ..........t......... | 349 | 95 |
| HM777359.1 | Hepatitis C virus isolate C1292 genotype 2j, complete genome | 249 | ..........t......... | 268 | 95 |
| FN666428.2 | Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol | 302 | ..........t......... | 321 | 95 |
| D84262.2 | Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC | 331 | ..........a......... | 350 | 95 |
| D17763.1 | HPCEGS Hepatitis C virus (isolate NZL1) genomic RNA, complete genome | 328 | ..........a......... | 347 | 95 |
| D28917.1 | HPCK3A Hepatitis C virus (isolate HCV-K3a/650) genomic RNA, complete g | 328 | ........t.a......... | 347 | 90 |
| AF207768.1 | Hepatitis C virus subtype 1b strain MD27, complete genome | 318 | ...t......t......... | 337 | 90 |
| AY859526.1 | Hepatitis C virus (isolate 6a33), complete genome | 284 | .....c....t......... | 303 | 90 |
| DQ480524.1 | Hepatitis C virus subtype 6a strain 6a74, complete genome | 287 | ....g.....t......... | 306 | 90 |
| EF632069.1 | Hepatitis C virus isolate TV241, complete genome | 327 | ..c.......a......... | 346 | 90 |
| EF632070.1 | Hepatitis C virus isolate TV249, complete genome | 327 | ..c.......a......... | 346 | 90 |
| EF632071.1 | Hepatitis C virus isolate VT21, complete genome | 313 | ..c.......a......... | 332 | 90 |
| EU246939.1 | Hepatitis C virus strain D49 polyprotein gene, complete cds | 302 | ..c.......a......... | 321 | 90 |
| EU529682.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V291/2002, complet | 1 | _____............... | 15 | 75 |
| EU255962.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V140/1991, complet | 1 | _____............... | 15 | 75 |
| FJ024274.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1707/2007, comple | 183 | .a.g......t......... | 202 | 85 |
| EU256091.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V455/2006, complet | 1 | _____....c.......... | 15 | 70 |
| EU256037.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V98/2004, complete | 270 | _______............. | 282 | 65 |